Major cell types

Only major cell types

## [1] "Endothelial" "Epithelial"  "Immune"      "Mesenchymal" "Fibroblasts"

Major cell types and immune subtypes and T cells as a group

## [1] "Endothelial"  "Epithelial"   "Fibroblasts"  "Mesenchymal"  "Myeloid"     
## [6] "NK_cells"     "Other_immune" "T_cells"

Subtypes

All subtypes

##  [1] "Myeloid"       "NK_cells"      "Other_immune"  "T_cells"      
##  [5] "Tc_cells"      "Th_cells"      "Epithelial_1"  "Epithelial_10"
##  [9] "Epithelial_2"  "Epithelial_3"  "Epithelial_4"  "Epithelial_5" 
## [13] "Epithelial_6"  "Epithelial_7"  "Epithelial_8"  "Epithelial_9" 
## [17] "Endothelial"   "Mesenchymal"   "Fibroblasts"

Subtypes (T cells as one group)

##  [1] "Endothelial"   "Epithelial_1"  "Epithelial_10" "Epithelial_2" 
##  [5] "Epithelial_3"  "Epithelial_4"  "Epithelial_5"  "Epithelial_6" 
##  [9] "Epithelial_7"  "Epithelial_8"  "Epithelial_9"  "Fibroblasts"  
## [13] "Mesenchymal"   "Myeloid"       "NK_cells"      "Other_immune" 
## [17] "T_cells"

Only Immune

All subtypes

## [1] "Myeloid"      "NK_cells"     "Other_immune" "T_cells"      "Tc_cells"    
## [6] "Th_cells"

Subtypes (T cells as one group)

## [1] "Myeloid"      "NK_cells"     "Other_immune" "T_cells"

Only Epithelial

All Epithelial subtypes

##  [1] "Epithelial_1"  "Epithelial_10" "Epithelial_2"  "Epithelial_3" 
##  [5] "Epithelial_4"  "Epithelial_5"  "Epithelial_6"  "Epithelial_7" 
##  [9] "Epithelial_8"  "Epithelial_9"

Stromal cells only

All subtypes

## [1] "Myeloid"      "NK_cells"     "Other_immune" "T_cells"      "Tc_cells"    
## [6] "Th_cells"     "Endothelial"  "Mesenchymal"  "Fibroblasts"

Subtypes (T cells as one group)

## [1] "Endothelial"  "Fibroblasts"  "Mesenchymal"  "Myeloid"      "NK_cells"    
## [6] "Other_immune" "T_cells"